Evolution Again!

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_Bazooka
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Re: Evolution Again!

Post by _Bazooka »

Hey Ceeb's...


FUN FACTS FOR KIDS:

Did you know that...

*A plover chick weighs about as much as five nickels?

*Golden plovers travel approximately 3,000 miles on their nonstop migration over the Pacific Ocean, between Alaska and Hawaii. They make the flight in about two days, averaging 60 miles per hour!

*One male golden plover has been studied for 18 years. This particular bird has returned to the same nesting area near Nome, year after year. This means he has flown 18 round trips to Hawaii, covering well over 100,000 miles in his life!

*When the three-month old golden plovers make their first migration to Hawaii they do so with no adult leaders! These birds have inherited the amazing instinct to find their wintering grounds, across thousands of miles of ocean.

http://www.debbiemilleralaska.com/GoldenPlover.htm
That said, with the Book of Mormon, we are not dealing with a civilization with no written record. What we are dealing with is a written record with no civilization. (Runtu, Feb 2015)
_Ceeboo
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Re: Evolution Again!

Post by _Ceeboo »

Hey Bazooooo! :smile: Thanks for the information!




FUN FACTS FOR KIDS:


Fun facts for kids and Ceeboos!


*One male golden plover has been studied for 18 years. This particular bird has returned to the same nesting area near Nome, year after year.


Hey, I bet this fellow has been on the Bering Sea Gold show!

*When the three-month old golden plovers make their first migration to Hawaii they do so with no adult leaders! These birds have inherited the amazing instinct to find their wintering grounds, across thousands of miles of ocean.


"Inherited the amazing instinct" (Hmmmmmm????????)

Peace,
Ceeboo
_Bret Ripley
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Re: Evolution Again!

Post by _Bret Ripley »

Ren wrote:here's a kickin' phunky phune that might be a bit more down your alley...
http://www.youtube.com/watch?v=oFXIALf9zDA
The sad thing is that there are folks who actually believe science works like this. In reality, a scientist who made a discovery that turned Darwinian evolution on its head would be a frickin' rock star.
_Harold Lee
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Re: Evolution Again!

Post by _Harold Lee »

DrW wrote:
Harold Lee wrote:
<Snip>
The only option that would save those birds, is if a few lucky birds mutated another way to survive and spread it around the gene pool of the population (or benefited from a lesser known epigenetic mechanism).
<Snip>

Harold,

As long as the evolutionists have the kind and undivided attention of the board's Chief Creationist in Charge, and for the benefit of others who are following the thread and may not be aware of the importance of epigenetics in adaptation, perhaps you could provide an explanation and a relevant example or two here, since you have obviously been thinking about this.

Thanks.


I don't feel comfortable or knowledgeable enough for that, sorry. :) Haven't been diligent in putting in my CE dues, and I'm 100% sure my understanding of epigenetics isn't any near complete or accurate.

But in a general sense reproduction takes place on a cellular level- mitosis and meiosis for sex cells. Occasionally there are mutations that take place when cells "split"- transposing, transplacing, entire sections being gone, repetition of genes, etc. There's four base molecules that compose DNA (the building blocks of MODERN life). They code EVERY biological quality and trait- including basic elements of personality, skin color, eye color, baldness, etc. Given how quickly and how many millions (billions) of these molecules get zipped and unzipped in order, mutations are just going to happen. Most of the time when these mutations happen they become dormant. When they take place in somatic cells (basically not sperm or eggs) that's generally what happens. When they take place in sex cells (which require a more complicated form of cellular reproduction and thus has a much greater probability of mutation) and this is the lucky guy that fertilizes the egg and become a zygote (or it's the lucky girl that gets fertilized), that set of DNA becomes the prototype that all somatic cells for that future organism will follow. That single mutation in one cell becomes a standard quality for all cells that will grow from the zygote. Every zygote has mutations, many. Most of the times, they're also dormant. Sometimes they're in places that affect critical components of a trait and the entire program (or gene) shuts down or creates a serious problem.

But every one in a while it tweaks the program (or gene) in such a way that the program becomes different. We've already talked ad infinitum about how the principles of natural selection work so that picks up where this'll end.

Well these mutations are all A,G,T,C molecules that are scrambled inevitably (although still with 99.99% integrity) are RANDOM. Whether the trait becomes phenotypic (or expressed in any way observable) is random. How it affects the gene it's composing isn't random but is determined by random qualities.

Go back to Lamarck. His theory of evolution was the predecessor to Darwin. He theorized, in contrast to random mutations, that traits were developed. The giraffe was his trademark example. In his model the giraffe thousands, maybe millions of years ago, began stretching its neck out to reach leaves on high branches. It secreted 'pangenes' that were passed down to the next generation, that also stretched his neck out, and on and on, until millions of years later the giraffe has a long neck. This is probably how most who misunderstand evolution picture the theory happening. It's a very basic and intuitive idea for evolution, but there is in fact nothing about it that involves randomness, mutations, or even necessitates natural selection (all of which formed the foundation for our current understanding until more recently). This made more sense when, back in the day, reproduction simply seemed like two parents mixing bodily fluids, and everything taking place under the microscopes wasn't understood.

Darwin's theory involved mutations, or nature. Lamarck's theory involved choice, nurture.

Darwin's theory obviously is not complete, but is a vast improvement on Lamarck's. Well one issue with Darwin's theory is the way it's been happening is too quick. Some evolutionary biologists like the long-winded Stephen Jay Gould more recently postulated punctuated equilibrium to theorize the existence of growth spurts of change when the pressure was on. That's of course intuitive also, and helped explained a lack of gradualism in fossils. But to go from single-celled organisms to humans, even by 3.5 billion years time, just seems to be happening too quickly. Especially when you consider mammals are only a few hundred million years old. Humans from the shared ancestor of neaderthals and homo sapiens, it's happening too quickly to simply be explained via mutations in sex cells in individuals yielding significant enough changes in phenotypes to providing a significant enough advantage to overcome the fight of chance for limited resources. Something has to be guiding evolution that forces or increases the chances of mutations that are relevant or takes place or relevant genes.

This is where I think my understanding of epigenetics falls short (essentially where epigenetics starts lol). Epigenetics is about bringing the nurture, environmental factors, into the nature of genetics. Instead of genes simply being a blueprint, a one-way street, it seems that they can be affected by stresses also. Mutations are still random, always have and will be, but which genes they hit may be impacted by which traits prove invaluable to the individual or population. This can speed up the mutation process on genes that could provide a competitive advantage. Bad mutations on these genes mean the organism has little chance- it's amplified given how valuable this trait is to the organism's survival. Conversely, any mutation that provides an advantage, no matter how small, becomes extremely significant because of on which gene or trait this takes place.

It brings the element of Lamarckian evolution, "guided" evolution, that makes the short time frames much more understandable.

But as far as I know epigenetics is essentially the study of how genetics can be affected by "environmental" factors ("environmental" being relative to mean all forces outside just the cells we're considering themselves, not necessarily needing to be factor outside the organism or in the habitat), through mechanisms beyond conventionally understood genetics. I think the details of how this feedback can occur is what you wanted explained lol.

If anyone can contribute to this here with examples, corrections, or anything further information that'd be greatly appreciated.
http://www.youtube.com/watch?NR=1&featu ... FYTc55nGEI

"I prefer a man who can swear a stream as long as my arm but deals justly with his brethren to the long, smooth-faced hypocrite." -Joseph Smith
_Harold Lee
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Re: Evolution Again!

Post by _Harold Lee »

If someone found a better and more satisfactory scientific explanation to biodiversity than evolution, that would be the most exciting moment in science we've had in 50+ years. Nothing would be more exciting that discovering a new universe of biological laws to work with.
http://www.youtube.com/watch?NR=1&featu ... FYTc55nGEI

"I prefer a man who can swear a stream as long as my arm but deals justly with his brethren to the long, smooth-faced hypocrite." -Joseph Smith
_DrW
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Re: Evolution Again!

Post by _DrW »

Harold,

Thanks for a detailed and readable explanation.

The Lamarck vs. Darwin / Nature vs. Nurture aspects you mentioned would seem important in determining how individual plants and animals turn out in the real world. Certainly deserves looking at if one wishes to really understand evolution (and, more importantly, gain some insight into their own offspring).

Since you asked for additional materials, here is a website on Lamarck vs. Darwin. It has a good quick explanation of why we believe Darwin.

This is a paper (PDF) on epigenic effects of environmental factors in pre-natal life that is quite good as well, and easily available: http://www.animal-science.org/content/88/13_electronic_suppl/E216.full.pdf

You clearly put a lot of work into your post. Hope folks take the time to really read it. Lots of good stuff.
David Hume: "---Mistakes in philosophy are merely ridiculous, those in religion are dangerous."

DrW: "Mistakes in science are learning opportunities and are eventually corrected."
_Ceeboo
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Re: Evolution Again!

Post by _Ceeboo »

Harold and DrW,

Thanks for the recent contributions to the thread!


Peace,
Ceeboo
_Harold Lee
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Joined: Tue Jun 28, 2011 6:36 pm

Re: Evolution Again!

Post by _Harold Lee »

I realize the original request was asking for epigenetic mechanisms specifically, not for that introductory rant above, so this'll try to very cautiously build upwards to answer that question. This is entering fringe science territory, so this will certainly be wrong now and even more so in just 5-10 years. But in science you have to go with the best current understanding so you have something to build from.

Hate to use wikipedia, but it happens to fit perfectly here:

This is the section on evolution for the entry "Epigenetics". First note it's short. Most epigenetic research is interested in practical medical research, not necessary in expanding biological theory (much like the paper DrW linked to above).

the despicable Wikipedia entry on epigenetics wrote:Evolution
Epigenetics can impact evolution when epigenetic changes are heritable. A sequestered germ line or Weismann barrier is specific to animals, and epigenetic inheritance is more common in plants and microbes. Eva Jablonka and Marion Lamb have argued that these effects may require enhancements to the standard conceptual framework of the modern evolutionary synthesis.[70][71] Other evolutionary biologists have incorporated epigenetic inheritance into population genetics models[72] or are openly skeptical.[73]
Two important ways in which epigenetic inheritance can be different from traditional genetic inheritance, with important consequences for evolution, are that rates of epimutation can be much faster than rates of mutation[74] and the epimutations are more easily reversible.[75] An epigenetically inherited element such as the [PSI+] system can act as a "stop-gap", good enough for short-term adaptation that allows the lineage to survive for long enough for mutation and/or recombination to genetically assimilate the adaptive phenotypic change.[76] The existence of this possibility increases the evolvability of a species.


What's funny is most of those sources, in this evolution section, are from the last several years. So again all the new talk about mechanisms for epigenetics is very, very new. If you're even 10 years behind you're still following Newton's laws. I think this field is more dynamic than quantum physics.

This Weismann barrier (so apparently there's a name for it lol) and the connection to Lamarckian evolution is exactly fitting. The issue is this- how do phenotypic expressions (which can change based on stresses, environmental factors, etc) get restructued or signaled back to the sex cells? The Weismann barrier is the concept that the feedback is not a two-way street, and deals a deathblow to any modern Lamarckian implications. Phenotypic expressions (which can be activated in layers) live and die with the individual organism and all mutation must only, solely be random, according to this theory which is probably 100 years old now.

Now for what was originally asked: mechanisms? How? I found a few collected examples neatly collected under the Weismann barrier entry since it addresses this very issue:

goddamn wikipedia again lol wrote:
Recent criticism

In the late 20th century there have been criticisms of an impermeable Weismann barrier. These criticisms are all centered around the activities of an enzyme called reverse transcriptase.
Evidence has begun to mount for horizontal gene transfer. Different species appear to be swapping genes through the activities of retroviruses. Retro-viruses are able to transfer genes between species because they reproduce by integrating their code into the genome of the host and they often move nearby code in the infected cell as well. Seeing as these viruses use RNA as their genetic information they need to use reverse transcriptase to convert their code into DNA first. If the cell they infect is a germline cell then that integrated DNA can become part of the gene pool of that species.
Other evidence against Weismann's barrier is found in the immune system. A controversial theory of Edward J. Steele's suggests that endogenous retroviruses carry new versions of V genes from soma cells in the immune system to the germ line cells. This theory is expounded in his book Lamarck's signature. Steele observes that the immune system needs to be able to evolve fast to match the evolutionary pressure (as the infective agents evolve very fast). He also observes that there are plenty of endogenous retro-viruses in our genome and it seems likely that they have some purpose.
Even if both of these possible exceptions turn out to be legitimate, the Weismann barrier just loses its absolute status. Without further examples, the penetration of the Weismann barrier is still very much an exception.



Please read the entire entry on the Weismann barrier entry if interested, it's not long.

So there you have mechanisms, the HOW, and this Weismann barrier theory as it's called will be gone I'm sure within 20 years, and finally modes for "nurture" evolution will be discovered. It will be a sweet day of vindication for everyone that tried to argue about how wrong I was about mutations only being random over the past 10 years.

The answer to Dr.W.'s question, of what mechanism, the only current mechanism for epigenetic mutation to sex cells is reverse transcriptase.

But, yes Darwinian evolution is just too slow for the Weismann barrier to be an absolute rule. You just can't go from rats to humans in a couple hundred million years without it. There is some sort of guidance that forces organisms, over generations, to evolve better and better based on what's relevant. Back before I became Mormon this exact nugget of controversy is what I wanted to study and try to discover (almost demonstrate, as inductive and antiscientific as that sounds). Had scholarship awards lined up, and then personal stupidity and naïvété struck as I fell into the Mormon trap, warped priorities and passions, and decided to go into information technology instead because it's what god wanted. Only thing I ever wanted to really get involved with for more than 10 minutes, but old dreams die hard sadly.

But anyways excusing the personal vein on this subject, the question "Is Darwininan evolution an absolute fact?" No it's not and it's not even a complete theory! But to get the right answer, defining "Darwinian evolution" is absolutely critical. This is one thing I meant, among others, when I said most scientists today would vote "Darwinian evolution is false" in the poll. Clear definitions are critical for accurate methodology.

This process is so complex, so prone to randomness, that if a person does want to believe a god directed evolution, it's hard to have many qualms with that. To me theistic evolution is much more a marvel than theistic creationism would be.
http://www.youtube.com/watch?NR=1&featu ... FYTc55nGEI

"I prefer a man who can swear a stream as long as my arm but deals justly with his brethren to the long, smooth-faced hypocrite." -Joseph Smith
_Ceeboo
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Re: Evolution Again!

Post by _Ceeboo »

Friends :smile:

Again, I invite you to pull up a chair, relax and shoot the crap with a friend. :smile:

A sneak preview of my next mind-bender (again, to me at least) that I will be posting in this thread comes by way of an article in 2007 by a Reuters author titled "Whales may have evolved from racoon-sized creatures".

The evolutionary steps as I understand them (I am open to corrections, light ear slaps, or dismissals)

Fish - to - Quadruped (Racoon) - to - Whale!

1- A fish spent millions of years growing gills and fins so it could swim and breathe.

2- Then crawls out of the ocean, evolved legs and lungs. Then evolved a furry exterior and became a quadruped (Racoon-sized creature).

3- Then it re-evolved, lost its forelegs and went back into the water to become the largest species known: A whale!

Do I have this right so far?

Thanks and peace,
Ceeboo
_Harold Lee
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Re: Evolution Again!

Post by _Harold Lee »

Ceeboo wrote:Friends :smile:

Again, I invite you to pull up a chair, relax and shoot the s*** with a friend. :smile:

A sneak preview of my next mind-bender (again, to me at least) that I will be posting in this thread comes by way of an article in 2007 by a Reuters author titled "Whales may have evolved from racoon-sized creatures".

The evolutionary steps as I understand them (I am open to corrections, light ear slaps, or dismissals)

Fish - to - Quadruped (Racoon) - to - Whale!

1- A fish spent millions of years growing gills and fins so it could swim and breathe.

2- Then crawls out of the ocean, evolved legs and lungs. Then evolved a furry exterior and became a quadruped (Racoon-sized creature).

3- Then it re-evolved, lost its forelegs and went back into the water to become the largest species known: A whale!

Do I have this right so far?

Thanks and peace,
Ceeboo


No Ceeboo. That is not right. :)

Fish > amphibian > reptile > mammal
|
/ \
cycles of extinct ancestor of
fish and new species
| extinct mammal that extinct ancestor of rats
| lived off amphibians \
| and fish
|
| / \
| extinct ancestor of dolphins extinct ancestor of nocturnal forager
| and seals
| / \
| extinct ancestor of dolphins extinct ancestor of raccoons
| and whales
| / \
|
----------------------------2013 AD-------------------------------------
fish whales raccoons

Probably would have been faster to just draw a gif lol.

EDIT: That doesn't look at all like it did typing it in, it took out spaces. Well hopefully you can imagine how it looks lol.
http://www.youtube.com/watch?NR=1&featu ... FYTc55nGEI

"I prefer a man who can swear a stream as long as my arm but deals justly with his brethren to the long, smooth-faced hypocrite." -Joseph Smith
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